import matplotlib.pyplot as plt
import numpy as np
from radtools.dos.pdos import PDOS
from radtools.routines import plot_horizontal_lines, plot_vertical_lines
__all__ = ["COLOURS", "plot_projected"]
COLOURS = [
"#00FFFF",
"#FF9720",
"#CD00FF",
"#FFFF2B",
"#00B9FF",
"#FF163D",
"#79FF35",
"#FF0BEA",
"#0200FF",
]
[docs]
def plot_projected(
pdos: PDOS,
efermi=0.0,
output_name="pdos",
title=None,
xlim=None,
ylim=None,
relative=False,
normalize=False,
interactive=False,
save_pickle=False,
colours=COLOURS,
total_label="default",
axes_labels_fontsize=14,
legend_fontsize=12,
title_fontsize=18,
):
r"""
Plot PDOS.
Parameters
----------
pdos : :py:class:`.PDOS`
PDOS for the plot.
efermi : float, default 0
Fermi energy.
output_name : str, default "pdos"
output_name for the plot file. Extension ".png" is added at the end.
title : str, optional
Title of the plot. Passed to the ``ax.set_title()``.
xlim : tuple
limits for the x (Energy) axis
ylim : tuple
limits for the y (PDOS) axis
relative : bool, default False
Relative plot style.
normalize : bool, default False
Whether to norma;ize relative plot style.
interactive : bool, default False
Whether to use interactive plotting mode.
save_pickle : bool, default False
Whether to save figure as a .pickle file.
Helps for custom modification of particular figures.
colours : list
List of colours to be used. values are passed directly to matplotlib
total_label : str or ``None``, default "default"
Label for the total data. If None , then the label is not added
axes_label_fontsize : int, default 14
Fontsize of the axes labels.
legend_fontsize : int, default 12
Fontsize of the legend.
title_fontsize : int, default 18
Fontsize of the title.
"""
n = len(pdos.projectors)
pdos = pdos.squeezed()
if relative:
fig, ax = plt.subplots(figsize=(9, 4))
else:
fig, axs = plt.subplots(n, 1, figsize=(9, n * 2))
if n == 1:
axs = [axs]
fig.subplots_adjust(hspace=0)
def set_up_axis(ax, i):
if normalize:
ax.set_ylabel("PDOS / LDOS", fontsize=axes_labels_fontsize)
else:
ax.set_ylabel("DOS, states/eV", fontsize=axes_labels_fontsize)
if i == n - 1:
if efermi == 0:
ax.set_xlabel("E, eV", fontsize=axes_labels_fontsize)
else:
ax.set_xlabel("E - E$_{Fermi}$, eV", fontsize=axes_labels_fontsize)
else:
ax.axes.get_xaxis().set_visible(False)
if ylim is not None:
ax.set_ylim(*tuple(ylim))
if xlim is not None:
ax.set_xlim(*tuple(xlim))
else:
ax.set_xlim(np.amin(pdos.energy), np.amax(pdos.energy))
if efermi != 0:
plot_vertical_lines(ax, 0)
if title is not None and (i == 0 or relative):
ax.set_title(title, fontsize=title_fontsize)
if normalize:
pdos = pdos.normalized(zeros_to_none=False)
if relative:
set_up_axis(ax, n - 1)
plot_horizontal_lines(ax, 0)
for i, projector in enumerate(pdos):
if not relative:
ax = axs[i]
set_up_axis(ax, i)
if pdos.spin_pol:
if total_label == "default":
label_up = f"{pdos.projectors_group} (up)"
label_down = f"{pdos.projectors_group} (down)"
elif total_label is None:
label_up = None
label_down = None
else:
label_up = f"{total_label} (up)"
label_down = f"{total_label} (down)"
if relative:
if i == 0:
ax.plot(
pdos.energy,
pdos.ldos[0],
"-",
lw=1,
color="blue",
alpha=0.8,
label=label_up,
)
ax.plot(
pdos.energy,
-pdos.ldos[1],
"-",
lw=1,
color="red",
alpha=0.8,
label=label_down,
)
ax.fill_between(
pdos.energy,
np.sum(pdos[:i], axis=0)[0],
np.sum(pdos[: i + 1], axis=0)[0],
lw=0,
color=colours[i % len(colours)],
# alpha=0.5,
label=f"{projector}",
)
ax.fill_between(
pdos.energy,
-np.sum(pdos[:i], axis=0)[1],
-np.sum(pdos[: i + 1], axis=0)[1],
lw=0,
color=colours[i % len(colours)],
# alpha=0.5,
)
else:
ax.fill_between(
pdos.energy,
0,
pdos.ldos[0],
lw=0,
color="blue",
alpha=0.2,
label=label_up,
)
ax.fill_between(
pdos.energy,
0,
-pdos.ldos[1],
lw=0,
color="red",
alpha=0.2,
label=label_down,
)
ax.plot(
pdos.energy,
pdos[projector][0],
"-",
lw=0.8,
color="blue",
alpha=0.8,
label=f"{projector} (up)",
)
ax.plot(
pdos.energy,
-pdos[projector][1],
"-",
lw=0.8,
color="red",
alpha=0.8,
label=f"{projector} (down)",
)
else:
if total_label == "default":
total_label = pdos.projectors_group
if relative:
if i == 0:
ax.plot(
pdos.energy,
pdos.ldos,
"-",
lw=1,
color="black",
alpha=0.8,
label=total_label,
)
ax.fill_between(
pdos.energy,
np.sum(pdos[:i], axis=0),
np.sum(pdos[: i + 1], axis=0),
lw=0,
color=colours[i % len(colours)],
# alpha=0.5,
label=projector,
)
else:
ax.fill_between(
pdos.energy,
0,
pdos.ldos,
lw=0,
color="black",
alpha=0.3,
label=total_label,
)
ax.plot(
pdos.energy,
pdos[projector],
"-",
lw=0.8,
color="black",
alpha=0.8,
label=projector,
)
if interactive:
ax.legend(
loc=(1.025, 0.2),
bbox_transform=ax.transAxes,
draggable=True,
fontsize=legend_fontsize,
)
else:
ax.legend(
loc=(1.025, 0.2), bbox_transform=ax.transAxes, fontsize=legend_fontsize
)
if interactive:
plt.show()
else:
plt.savefig(f"{output_name}.png", dpi=600, bbox_inches="tight")
if save_pickle:
import pickle
with open(f"{output_name}.pickle", "wb") as file:
pickle.dump(fig, file)
plt.close()
